Instead of defining those variables in the MyComputer/Properties/Advanced/EnvironmentVariable menu, just define them in the C:/autoexec.bat file .
set JAVA_HOME=c:\sdk\jdk_1.6.0
set CYGWIN_HOME=C:\dev\frag\bin\win32\cygwin\
REM set CYGWIN_HOME=C:\sdk\cygwin\
set HOME=c:/home/michaelz
set ANT_HOME=c:\sdk\apache-ant-1.6.5\
REM for some reason, I could split this line in several lines ...
REM set PATH=%CYGWIN_HOME%\bin;%PATH%
REM set PATH=%YOUR_KIT%;%PATH%Publish Post
PATH=%JAVA_HOME%\bin;c:\sdk\cmd;%CYGWIN_HOME%\bin;%ANT_HOME%\bin
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